Arabidopsis thaliana (L.) Heynh. (mouse-ear cress) [ATH]

FULL NAME: Probable RNA polymerase II transcription factor B subunit 1-1


DESCRIPTION:
Acts as component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA (By similarity).

STRUCTURE SIMILARITY:
Contains 2 BSD domains.


RELATED PATHWAY(S):
nucleotide excision repair (NER)
transcription factors


Amino acids sequence

        10         20         30         40         50         60
MAGGQIEKLV KYKSTVKDPG TPGFLRIREG MLLFVPNDPK SDSKLKVLTQ NIKSQKYTKE
        70         80         90        100        110        120
GSNKPPWLNL TNKQAKSHIF EFENYPDMHA CRDFITKALA KCELEPNKSV VSTSSEQLSI
       130        140        150        160        170        180
KELELRFKLL RENSELQRLH KQFVESKVLT EDEFWATRKK LLGKDSIRKS KQQLGLKSMM
       190        200        210        220        230        240
VSGIKPSTDG RTNRVTFNLT PEIIFQIFAE KPAVRQAFIN YVPSKMTEKD FWTKYFRAEY
       250        260        270        280        290        300
LYSTKNTAVA AAEAAEDEEL AVFLKPDEIL ARETRHKIRR VDPTLDMEAD QGDDYTHLMD
       310        320        330        340        350        360
HGIQRDGTMD VVEPQNDQFK RSLLQDLNRH AAVVLEGRSI DVESEDTRIV AEALTRVKQV
       370        380        390        400        410        420
SKADGETTKD ANQERLERMS RVAGMEDLQA PQNFPLAPLS IKDPRDYFES QQGNVLNVPR
       430        440        450        460        470        480
GAKGLKRNVH EAYGLLKESI LEIRATGLSD PLIKPEVSFE VFSSLTRTIA TAKNINGKNP
       490        500        510        520        530        540
RESFLDRLPK STKDEVLHHW TSIQELLKHF WSSYPITTTY LHTKVGKLKD AMSNTYSKLE
       550        560        570        580        590
AMKESVQSDL RHQVSLLVRP MQQALDAAFH HYEVDLQRRT AKSGERPNGY V

Encoded by gid:842024 gene


OTHER NAME(S):
F20N2.28
F20N2_28


Nucleic acid sequence

        10         20         30         40         50         60
atggctggtg ggcaaataga gaagctagtc aaatacaaga gcactgtcaa ggatccagga
        70         80         90        100        110        120
actcctggat ttctcagaat tagagaaggg atgttgctct tcgtccctaa tgatcccaaa
       130        140        150        160        170        180
tcagattcta agctcaaagt acttactcag aacatcaaaa gtcaaaaata taccaaagaa
       190        200        210        220        230        240
ggatcaaata aacctccttg gctcaatctc accaacaagc aggcaaagag tcatatcttt
       250        260        270        280        290        300
gagtttgaaa attatcccga catgcatgct tgccgtgatt tcatcactaa ggcccttgct
       310        320        330        340        350        360
aaatgtgaat tggagcctaa taaatccgtt gtctcgacat cttccgagca actcagtatt
       370        380        390        400        410        420
aaggaattgg agctgcgctt caagcttctg agagaaaata gtgagctgca gagattgcat
       430        440        450        460        470        480
aagcaatttg tggaaagtaa agtactgact gaagatgaat tctgggctac aagaaagaaa
       490        500        510        520        530        540
ttacttggta aagattccat cagaaagtca aaacagcagc tcgggcttaa gagcatgatg
       550        560        570        580        590        600
gtttctggca tcaaaccatc tactgatggg cggactaata gagtgacgtt taacttgaca
       610        620        630        640        650        660
cctgagataa tttttcagat ttttgctgag aagccagctg ttcggcaggc attcatcaat
       670        680        690        700        710        720
tatgttccga gtaagatgac agaaaaagac ttctggacaa aatattttag agcagaatat
       730        740        750        760        770        780
ctttacagca ccaaaaatac agcagtagct gcagcagaag ctgctgagga cgaggaactc
       790        800        810        820        830        840
gctgtctttc tgaagcctga tgagatattg gctcgggaaa ctcgtcacaa gattagacgg
       850        860        870        880        890        900
gttgatccaa ctcttgacat ggaggctgac cagggagacg actacactca tcttatggac
       910        920        930        940        950        960
cacgggatcc agcgtgatgg caccatggat gttgttgaac cacaaaatga tcagtttaaa
       970        980        990       1000       1010       1020
cgatcacttt tgcaagatct taatcgtcat gctgctgttg tattggaagg cagaagcatt
      1030       1040       1050       1060       1070       1080
gatgttgagt cagaagatac aaggattgtt gcagaggctc tcacacgggt taaacaagta
      1090       1100       1110       1120       1130       1140
agcaaagctg atggtgaaac caccaaggac gctaatcagg agagattgga aagaatgtcc
      1150       1160       1170       1180       1190       1200
cgggtagcag gaatggagga tcttcaagca ccacaaaatt tcccattggc gccgctttct
      1210       1220       1230       1240       1250       1260
atcaaggatc ctcgtgatta ctttgaatct caacaaggaa acgtcctcaa tgtacccaga
      1270       1280       1290       1300       1310       1320
ggagcaaagg gcttgaagag aaatgtccat gaagcttatg gattactaaa ggaatccatt
      1330       1340       1350       1360       1370       1380
ttagagatta gagctacagg attaagtgat ccgttgatta agcctgaagt ttctttcgag
      1390       1400       1410       1420       1430       1440
gttttcagtt cgttaacccg aaccattgca actgctaaaa atattaatgg gaagaaccca
      1450       1460       1470       1480       1490       1500
cgagagagct ttctggacag attaccaaag tccactaagg atgaagttct acaccattgg
      1510       1520       1530       1540       1550       1560
acatcaatac aagaattact gaaacatttt tggtcatctt atccgataac aaccacatat
      1570       1580       1590       1600       1610       1620
cttcatacca aggttggtaa actgaaggat gcaatgtcca atacatattc aaaacttgag
      1630       1640       1650       1660       1670       1680
gcaatgaaag agtcggtgca atctgatctc cggcatcagg tttctctact ggttcgtcca
      1690       1700       1710       1720       1730       1740
atgcaacagg ctcttgacgc tgcgttccat cactacgaag tggatctgca gagaagaaca
      1750       1760       1770
gctaagagcg gcgaaagacc aaacggctac gtatag  

Last modification date: Oct. 2, 2011