Schizo-saccharomyces pombe Lindner (fission yeast) [SPO]

FULL NAME: Transcription initiation factor IIF subunit alpha


DESCRIPTION:
TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation (By similarity).

STRUCTURE SIMILARITY:
Belongs to the TFIIF alpha subunit family.


RELATED PATHWAY(S):
transcription factors


Amino acids sequence

        10         20         30         40         50         60
MDSQETKVFE NVKQENPDEK KPKVEEPDSQ NNASTQSQQK FLDFQLSWCP ESERKTTKYH
        70         80         90        100        110        120
LLKFHSNKAI DPSKSFVPPI KMQRRDPNAP SSSNGEQNAE QGSSSNVNIA SIAPYGGAQN
       130        140        150        160        170        180
MKQNAFKRKT RQVVKVDPQA RRLQEEELSP WIMEDFEGKN TWVSTMEGGQ SSAYVLFMFS
       190        200        210        220        230        240
ENGFKVIPTD RFYRFNQRNN FQTLSIDEAE AKMNKKTPIP RWFMKKESEE NLAEAGSASP
       250        260        270        280        290        300
MYKLKTVPNA RPVTGPRASG SDDELDYDEE FADDEEAPIM EGNEEDNKKL KDKIKKEMLT
       310        320        330        340        350        360
ANLFGEADQD VDLEEENDRQ MSREGKKLQR YLKLLEKNLA YESDEEDEDP YASSHDASSE
       370        380        390        400        410        420
EEVLQEEEEL QKREEKLKSR FSANASKTNT PRPLERTPSS VSPVKASSQL QSPNTSIQIR
       430        440        450        460        470        480
PQEQLINKPG YIILRLSSEK LSRFANDFPR MVPSMGSTET SVGDQVEVVG DTTNVPIDDS
       490        500        510        520        530
NLITEAEVMK ALRAGPISIK DLVHLFQRKI RADNRNRLGI QKIIRKVARF ENKLLVLKN

Encoded by tfg1 gene


Nucleic acid sequence

        10         20         30         40         50         60
atggattcac aagagacaaa agtttttgaa aatgtaaagc aggaaaatcc tgatgagaag
        70         80         90        100        110        120
aaacccaaag ttgaggagcc tgactcccaa aataatgctt cgacacaatc gcagcaaaaa
       130        140        150        160        170        180
tttttggatt tccagctttc atggtgtcca gagagtgaaa gaaaaacaac taaataccat
       190        200        210        220        230        240
ttattaaaat ttcactctaa caaagccatt gatccttcca aatcctttgt gccacccata
       250        260        270        280        290        300
aaaatgcaac gcagagaccc caatgctcca tcttcgtcaa acggagaaca aaatgcagaa
       310        320        330        340        350        360
caaggaagct ccagtaacgt gaacatcgct tcaatcgctc cttacggtgg cgctcaaaac
       370        380        390        400        410        420
atgaagcaga atgcctttaa aaggaaaact cgccaggtcg tcaaagttga tccacaggcc
       430        440        450        460        470        480
cgcagactac aagaggagga gttatctcct tggattatgg aagattttga aggaaaaaac
       490        500        510        520        530        540
acatgggtta gtacgatgga aggcggccaa tcgtctgcat atgtattgtt catgttctct
       550        560        570        580        590        600
gaaaatggtt ttaaggtgat tccaactgat agattttatc gatttaatca acgtaacaat
       610        620        630        640        650        660
ttccaaacgc tttcaattga tgaagcggag gcaaagatga ataaaaaaac tccgattcct
       670        680        690        700        710        720
cgctggttta tgaaaaagga gagtgaagaa aacttagcag aggcaggctc tgcttcaccc
       730        740        750        760        770        780
atgtataaac ttaagacggt tccaaatgca cgtcctgtaa cgggaccgag agctagtgga
       790        800        810        820        830        840
agtgatgatg aactagatta tgacgaggaa ttcgctgacg atgaagaagc acctattatg
       850        860        870        880        890        900
gaaggaaatg aagaagataa taagaagttg aaagacaaga ttaaaaagga aatgctaact
       910        920        930        940        950        960
gccaatttgt ttggtgaagc tgatcaagat gtcgaccttg aagaggagaa tgatagacaa
       970        980        990       1000       1010       1020
atgtcgcgtg aaggaaaaaa gctgcaaaga tacttaaaat tgcttgaaaa gaatttagct
      1030       1040       1050       1060       1070       1080
tatgagagtg atgaggaaga tgaggaccct tatgcttcct cccatgatgc gtctagtgaa
      1090       1100       1110       1120       1130       1140
gaagaagttt tgcaagaaga agaagaattg caaaagcgtg aagaaaaact aaagtctaga
      1150       1160       1170       1180       1190       1200
ttttctgcga acgcttccaa aactaataca ccaagaccac tagaacgaac gccaagcagc
      1210       1220       1230       1240       1250       1260
gtatctcctg tcaaagcttc atcgcaacta caatcaccta atacttctat tcaaataagg
      1270       1280       1290       1300       1310       1320
cctcaagaac aacttattaa caaacctgga tatataattc tccgcttatc aagtgaaaag
      1330       1340       1350       1360       1370       1380
ttatcacggt ttgccaatga ctttccccgt atggtcccta gcatggggtc tacagaaacg
      1390       1400       1410       1420       1430       1440
agtgtaggag atcaagtgga ggttgtggga gatactacaa atgttccaat tgatgattct
      1450       1460       1470       1480       1490       1500
aatctgatta cggaggcaga ggtaatgaag gctttaagag ctggtcccat ttctattaag
      1510       1520       1530       1540       1550       1560
gatctagttc acctgttcca acgcaaaatt agagccgaca acagaaatcg gttgggaata
      1570       1580       1590       1600       1610       1620
cagaagatca ttcgaaaggt tgctcgattt gagaacaagc tactcgtttt aaaaaactag

Last modification date: Oct. 2, 2011