Schizo-saccharomyces pombe Lindner (fission yeast) [SPO]

FULL NAME: RNA polymerase II transcription factor B subunit 1


DESCRIPTION:
Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA.

STRUCTURE SIMILARITY:
Contains 2 BSD domains.


RELATED PATHWAY(S):
nucleotide excision repair (NER)
transcription factors


Amino acids sequence

        10         20         30         40         50         60
MIRVFIVVKE GEDPTSLVFH FTGTPNAREN CDMITNELRN AIQRQREGSQ SKPQGANVDR
        70         80         90        100        110        120
VNSTNLEKDI DLQESLLTNN PDLLQTFKEA VMKGHLSNEQ FWSTRLHLLR AHAVERSQQR
       130        140        150        160        170        180
GPYNVLSTIK PKTVDNQMKV SLTGQQIHDM FEQHPLLRKV YDKHVPPLAE GEFWSRFFLS
       190        200        210        220        230        240
KLCKKLRGDR ITPMDPSDDI MDKYLKDNEE VTKVSDEPIA SHLFDLEGND QNANVIAELR
       250        260        270        280        290        300
PDITMRIDKE ALPFMKNINQ LSERLLEKSL GNSKRFNNEN EETYLKESGF HDLEEEASDS
       310        320        330        340        350        360
KVVLKIKGQD QLLENNFVPS KNQVGLEPLP SLEALQHLYQ EDSISLNHIE HDSDSLAEAA
       370        380        390        400        410        420
MQLTQSMREK HEFETHGTAS NLPIDIKNEI VLCHTVTIEF LHQFWNALLN TTFPDKKAMA
       430        440        450        460        470
PLQNALLNSK KRVEAIASQA QEQNVDPKLV YELVSCTLTS IDTSISEYQR RMSYPPA

Encoded by tfb1 gene


Nucleic acid sequence

        10         20         30         40         50         60
atgattcgtg tttttatagt agtaaaggaa ggtgaagatc ccacttcttt agtatttcat
        70         80         90        100        110        120
ttcaccggta ctcctaatgc cagagaaaat tgtgatatga ttactaatga gttgagaaat
       130        140        150        160        170        180
gcgatacaaa gacaaaggga aggctctcaa tctaaaccac aaggagccaa tgtcgatcgt
       190        200        210        220        230        240
gtaaattcta cgaatctaga aaaggacatc gacttacaag agtctttgct tactaacaat
       250        260        270        280        290        300
cccgatctct tacaaacatt taaggaagca gttatgaagg gacatttaag taatgagcaa
       310        320        330        340        350        360
ttttggagca caaggcttca tttgctccgc gctcatgctg tagaaaggtc tcagcagcgt
       370        380        390        400        410        420
ggtccttata atgtcttgtc tactattaaa cctaaaacag tggacaacca aatgaaagtt
       430        440        450        460        470        480
tcccttaccg gccagcaaat tcacgatatg tttgaacaac atccattgct ccgaaaggta
       490        500        510        520        530        540
tatgacaagc atgtgcctcc tctagcagaa ggagagtttt ggagtagatt tttcctttcc
       550        560        570        580        590        600
aagctttgta aaaagcttcg tggcgacaga attacaccaa tggatccctc tgatgatata
       610        620        630        640        650        660
atggataagt atttaaaaga taatgaagag gtaaccaaag tatcggatga acctattgca
       670        680        690        700        710        720
tcgcacctct ttgatttaga aggaaatgat caaaatgcaa atgtaatagc agaacttaga
       730        740        750        760        770        780
cctgatatca ctatgcgaat tgacaaagaa gctctaccgt ttatgaaaaa catcaatcag
       790        800        810        820        830        840
ctttcggaaa gacttttgga aaaaagtttg ggaaactcta aacgatttaa caacgaaaat
       850        860        870        880        890        900
gaagaaacat acttaaaaga atctggtttt cacgatttag aagaagaagc cagtgactct
       910        920        930        940        950        960
aaagttgtct taaaaatcaa aggtcaagat cagttattgg aaaataattt tgtcccctca
       970        980        990       1000       1010       1020
aaaaatcaag ttggtttaga gcctttgcct tcattggaag ctcttcaaca tttataccag
      1030       1040       1050       1060       1070       1080
gaagattcga taagcttaaa tcacattgaa catgattctg actctttggc tgaagccgct
      1090       1100       1110       1120       1130       1140
atgcagctta ctcagagtat gcgcgaaaag catgagtttg agacccacgg cactgcatca
      1150       1160       1170       1180       1190       1200
aatttaccta ttgacataaa aaatgaaatt gttttgtgcc ataccgttac gatagaattt
      1210       1220       1230       1240       1250       1260
ttgcatcaat tttggaatgc cttgttgaat acaactttcc cggacaagaa ggcgatggcc
      1270       1280       1290       1300       1310       1320
ccccttcaga atgctctgtt aaattcgaaa aaaagggtgg aggcaattgc gagccaggct
      1330       1340       1350       1360       1370       1380
caggaacaaa acgttgatcc aaaactggtt tatgagttgg tatcctgtac gctcacttct
      1390       1400       1410       1420       1430
attgatacgt caatctcgga gtatcaaaga cgaatgtctt atcctcctgc ttag

Last modification date: Oct. 2, 2011