Schizo-saccharomyces pombe Lindner (fission yeast) [SPO]

FULL NAME: DNA repair protein rhp26


DESCRIPTION:
Involved in transcription-coupled repair (TCR).

STRUCTURE SIMILARITY:
Contains 1 helicase C-terminal domain.
Contains 1 helicase ATP-binding domain.


RELATED PATHWAY(S):
nucleotide excision repair (NER)


Amino acids sequence

        10         20         30         40         50         60
MSVNEDLSHL GVFSVDQENL ERDVTNTASE YIAHESREIE KKRLQKVRKE ISSVKEKIRR
        70         80         90        100        110        120
LDERIDSRLT KISVKENFRK QLSKFRDTLQ SLQSDENDIK RRLNNEDSAN APGIGAFSTE
       130        140        150        160        170        180
ELERQELIRT GKVTPFRNLS GLQKEVDFDD ESSIREAVIK SEGTYYETAP HLSSEPSNID
       190        200        210        220        230        240
HGIIPRDEKD EYVTVDAVTE KVVTAAIDDG DDLVYRQRLN AWCANRKELR DQASASENNK
       250        260        270        280        290        300
DRGEFEGKDE WLLPHPSKKG QTFEGGFTIP GDIRPHLFRY QVTCVQWLWE LYCQEAGGII
       310        320        330        340        350        360
GDEMGLGKTI QIVSFLSSLH HSGKFQKPAL IVCPATLMKQ WVNEFHTWWA PLRVVVLHAT
       370        380        390        400        410        420
GSGQRASREK RQYESDASES EAEESKTSIK LRGASSSFHR YAKNLVESVF TRGHILITTY
       430        440        450        460        470        480
AGLRIYGDLI LPREWGYCVL DEGHKIRNPD SEISISCKQI RTVNRIILSG TPIQNNLTEL
       490        500        510        520        530        540
WNLFDFVFPG RLGTLPVFQN QFALPINIGG YANASNVQVQ TAYKCACMLR DLISPYLLRR
       550        560        570        580        590        600
MKLDVAADLP KKSEQVLFCK LTPLQRKAYQ DFLQGSDMQK ILNGKRQMLY GIDILRKICN
       610        620        630        640        650        660
HPDLVTREYL LHKEDYNYGD PEKSGKLKVI RALLTLWKKQ GHRTLLFSQT RQMLDILEIG
       670        680        690        700        710        720
LKDLPDVHYC RMDGSTSIAL RQDLVDNFNK NEYFDVFLLT TRVGGLGVNL TGADRVILFD
       730        740        750        760        770        780
PDWNPSTDAQ ARERAWRLGQ KKDVVVYRLM TAGTIEEKIY HRQIFKQFLT NKILKDPKQR
       790        800        810        820        830        840
RFFKMTDLHD LFTLGDNKTE GTETGSMFLG SERVLRKDNS SRNGNEAEDI PARDRKKHKI
       850        860        870        880        890        900
HDKGKKVNSS KVFEKMGIAS MEKYKPPQES NVTKTNSDST LGDDSVLDDI FASAGIQSTL
       910        920        930        940        950        960
KHDDIMEASQ TESILVEKEA TRVANEALRA VSSFRRPPRQ LIPPQQSTNV PGTSKPSGPI
       970
TSSTLLARLK QRR    

Encoded by rhp26 gene


Nucleic acid sequence

        10         20         30         40         50         60
atgagtgtca atgaagatct atcccattta ggggtttttt cggttgacca agagaatttg
        70         80         90        100        110        120
gaacgcgatg ttacgaatac tgctagtgag tacattgcac atgaaagtcg agagatcgaa
       130        140        150        160        170        180
aagaagagac ttcaaaaagt caggaaagaa atatcttctg taaaagaaaa aatacgtcgc
       190        200        210        220        230        240
cttgatgagc gtatagacag tcgacttaca aaaataagtg tcaaggagaa cttccgcaaa
       250        260        270        280        290        300
caattatcta aattccgaga cactcttcaa agtttacaat cagacgaaaa tgatattaag
       310        320        330        340        350        360
agaagactta ataacgaaga ttcggcaaat gcccctggta taggtgcatt ttcgactgaa
       370        380        390        400        410        420
gaattggaaa gacaagagct catccgtact ggtaaggtta caccgtttcg aaatctctct
       430        440        450        460        470        480
ggactacaaa aagaagttga ttttgatgat gaatctagca ttcgtgaggc tgttataaag
       490        500        510        520        530        540
tctgaaggaa catactatga aacggcacct catttgagtt cggagccgtc aaatattgat
       550        560        570        580        590        600
catgggatta ttccaagaga cgaaaaagat gagtacgtaa ctgtggatgc tgttacggag
       610        620        630        640        650        660
aaagtagtaa ctgccgctat agatgatgga gatgatttgg tatatcgaca aaggcttaat
       670        680        690        700        710        720
gcttggtgtg cgaatcgtaa ggaattacga gatcaggcct cagcatctga aaacaataaa
       730        740        750        760        770        780
gatagaggag agtttgaagg taaagatgag tggttactac ctcatccttc caaaaaagga
       790        800        810        820        830        840
cagacttttg agggtggatt taccatccca ggtgatattc gcccacatct tttccgttat
       850        860        870        880        890        900
caagtcactt gcgtacaatg gttatgggaa ctctattgtc aagaggccgg aggaatcatt
       910        920        930        940        950        960
ggtgatgaaa tgggactagg aaaaactatt caaatagtat ctttcctttc gtctttgcat
       970        980        990       1000       1010       1020
cactctggca aatttcaaaa gcctgcactt atcgtttgtc cagcgacttt aatgaagcag
      1030       1040       1050       1060       1070       1080
tgggttaatg agtttcatac atggtgggct ccattacgtg ttgttgttct tcatgctact
      1090       1100       1110       1120       1130       1140
ggcagcggac agcgtgcttc acgcgaaaag agacagtatg aatctgacgc ttctgaaagt
      1150       1160       1170       1180       1190       1200
gaagcggaag aaagcaaaac ctccataaaa ttaagaggtg cttcaagttc attccacaga
      1210       1220       1230       1240       1250       1260
tacgctaaga acttagttga aagtgtcttc actagaggcc acattttaat tacaacatat
      1270       1280       1290       1300       1310       1320
gctggtttaa ggatatatgg tgatttgatt ttaccacggg aatggggtta ttgtgttttg
      1330       1340       1350       1360       1370       1380
gatgaagggc acaaaatacg aaacccagat tctgaaatat ctatttcgtg taagcaaatc
      1390       1400       1410       1420       1430       1440
cgtactgtga ataggattat cctctcaggg actccgatcc agaacaacct taccgagctt
      1450       1460       1470       1480       1490       1500
tggaatttat ttgattttgt atttcctgga agattgggta cattaccggt atttcaaaat
      1510       1520       1530       1540       1550       1560
caatttgcct tacctattaa tattggtggt tatgccaatg cttcaaatgt tcaagtgcaa
      1570       1580       1590       1600       1610       1620
accgcttata aatgcgcctg catgcttcga gatttaattt ctccttattt acttagaaga
      1630       1640       1650       1660       1670       1680
atgaagcttg acgttgctgc agatttacct aagaagtccg aacaagtatt gttctgtaag
      1690       1700       1710       1720       1730       1740
ctgactcctt tacaaaggaa agcttaccaa gattttttgc aaggctctga tatgcaaaag
      1750       1760       1770       1780       1790       1800
atcttgaacg gaaagcgtca aatgctttat ggaattgata tactacgaaa aatttgtaat
      1810       1820       1830       1840       1850       1860
catccagatc ttgtaactcg agagtacttg ttacataaag aagattacaa ctatggtgat
      1870       1880       1890       1900       1910       1920
cctgaaaagt ctggcaaact gaaggttatt agagcattac taactttgtg gaaaaaacaa
      1930       1940       1950       1960       1970       1980
ggacatagaa ctcttctatt ttctcagact cgccaaatgc tcgacatact ggaaatagga
      1990       2000       2010       2020       2030       2040
ttaaaggatt tgccggatgt tcattactgt cgcatggatg gtagcacatc tattgcttta
      2050       2060       2070       2080       2090       2100
agacaagatt tggtggacaa ctttaataaa aatgagtatt ttgatgtgtt tcttctaact
      2110       2120       2130       2140       2150       2160
actcgtgttg gtggattagg agtcaatttg actggtgctg acagggtaat tctttttgat
      2170       2180       2190       2200       2210       2220
cctgattgga atccctcaac ggatgctcaa gcacgtgaac gtgcttggag actgggccaa
      2230       2240       2250       2260       2270       2280
aagaaagatg tagtagttta tcggttgatg actgctggaa ctattgaaga aaaaatttat
      2290       2300       2310       2320       2330       2340
catcgtcaaa tctttaagca gtttctgact aacaaaattt tgaaagatcc aaaacaaaga
      2350       2360       2370       2380       2390       2400
aggtttttta aaatgacgga cttgcacgat ttgtttacgt taggcgataa caagactgag
      2410       2420       2430       2440       2450       2460
ggcactgaga caggcagcat gtttttggga tctgaacgag tacttcgaaa ggataattcc
      2470       2480       2490       2500       2510       2520
tcaagaaatg gcaatgaagc tgaagatatt ccagctcgtg accgaaaaaa gcacaaaatt
      2530       2540       2550       2560       2570       2580
cacgacaaag gtaaaaaagt taacagctcc aaagtgtttg aaaaaatggg gattgcatcg
      2590       2600       2610       2620       2630       2640
atggaaaagt ataaaccacc gcaagagtca aatgttacta agacaaactc tgattcgact
      2650       2660       2670       2680       2690       2700
ttaggggatg attccgtcct tgatgatatt tttgctagtg ctggtattca gagtacttta
      2710       2720       2730       2740       2750       2760
aagcacgacg atatcatgga agcctcccag actgaaagca tattggttga aaaagaagcg
      2770       2780       2790       2800       2810       2820
acgcgtgttg ctaatgaagc tctgcgtgca gtttcatctt ttcggcgacc tcctcgtcaa
      2830       2840       2850       2860       2870       2880
cttatacctc cgcagcaatc tactaatgtt cctggtactt ctaaaccatc aggtccgatt
      2890       2900       2910       2920
acttcaagca ctcttcttgc ccgactaaaa cagagacgat ga 

Last modification date: Oct. 2, 2011