Arabidopsis thaliana (L.) Heynh. (mouse-ear cress) [ATH]

FULL NAME: Probable RNA polymerase II transcription factor B subunit 1-3


DESCRIPTION:
Acts as component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA (By similarity).

STRUCTURE SIMILARITY:
Contains 2 BSD domains.


RELATED PATHWAY(S):
nucleotide excision repair (NER)
transcription factors


Amino acids sequence

        10         20         30         40         50         60
MEKRVKYKSF VKDPGTLGSL ELSEVMLLFV PNDPKSDLKL KVQTHNIKSQ KYTKEGSNKP
        70         80         90        100        110        120
PWLNLTSKQG RSHIFEFENY PDMHACRDFI TKALAKCEEE PNKLVVLTPA EQLSMAEFEL
       130        140        150        160        170        180
RFKLLRENSE LQKLHKQFVE SKVLTEDEFW STRKKLLGKD SIRKSKQQMG LKSMMVSGIK
       190        200        210        220        230        240
PSTDGRTNRV TFNLTSEIIF QIFAEKPAVR QAFINYVPKK MTEKDFWTKY FRAEYLYSTK
       250        260        270        280        290        300
NTAVAAAEAA EDEELAVFLK PDEILAQEAR QKMRRVDPTL DMDADEGDDY THLMDHGIQR
       310        320        330        340        350        360
DGTNDIIEPQ NDQLKRSLLQ DLNRHAAVVL EGRCINVQSE DTRIVAEALT RAKQVSKADG
       370        380        390        400        410        420
EITKDANQER LERMSRATEM EDLQAPQNFP LAPLSIKDPR DYFESQQGNI LSEPRGAKAS
       430        440        450        460        470        480
KRNVHEAYGL LKESILVIRM TGLSDPLIKP EVSFEVFSSL TRTISTAKNI LGKNPQESFL
       490        500        510        520        530        540
DRLPKSTKDE VIHHWTSIQE LVRHFWSSYP ITTTYLSTKV GKLKDAMSNT YSLLDAMKQS
       550        560        570
VQSDLRHQVS LLVRPMQQAL DAAFQHYESD LQRRTAKIT  

Encoded by gid:825315 gene


Nucleic acid sequence

        10         20         30         40         50         60
atggagaagc gagtcaaata caagagcttt gtgaaggatc caggaactct tggatccctc
        70         80         90        100        110        120
gaattaagtg aagtgatgct gctctttgtc ccaaatgatc ctaaatcaga tttgaagctt
       130        140        150        160        170        180
aaagttcaga ctcacaacat caaaagtcag aaatatacca aagaaggatc aaataaacct
       190        200        210        220        230        240
ccttggctca atctgaccag caagcaggga aggagtcata tctttgagtt tgaaaattat
       250        260        270        280        290        300
cctgacatgc atgcttgtcg tgatttcatc actaaggccc ttgctaaatg tgaagaggag
       310        320        330        340        350        360
cctaataaac tagttgtctt gacacctgct gaacaactta gtatggcaga atttgagcta
       370        380        390        400        410        420
cgcttcaagc ttcttcgaga aaatagtgag ttgcagaaat tgcataagca atttgtggaa
       430        440        450        460        470        480
agtaaagtcc tgacggaaga cgaattctgg tctacgagga agaaattact tggtaaagat
       490        500        510        520        530        540
tccattagaa agtcaaaaca acagatgggg ctcaaaagca tgatggtttc aggcatcaaa
       550        560        570        580        590        600
ccgtctactg atggccggac taatagggtg acgtttaact taacgtctga gataattttt
       610        620        630        640        650        660
cagatttttg ctgagaagcc ggctgttcgc caggcattca taaattatgt tccgaaaaag
       670        680        690        700        710        720
atgacagaaa aggacttttg gacaaaatat tttagagcag aatatcttta cagcacaaaa
       730        740        750        760        770        780
aatacagcag tagctgcagc agaagctgct gaggatgagg aactcgctgt ctttctgaag
       790        800        810        820        830        840
cctgacgaga tattggctca ggaagctcgt caaaagatga gacgggttga tccaactctt
       850        860        870        880        890        900
gacatggacg ctgacgaggg agatgactac acccatctta tggaccacgg gatccagcgc
       910        920        930        940        950        960
gatggcacca atgacattat tgaaccacag aatgaccagc ttaagaggtc acttttacaa
       970        980        990       1000       1010       1020
gatcttaatc gtcatgctgc tgttgtattg gaaggaagat gcatcaatgt tcagtctgaa
      1030       1040       1050       1060       1070       1080
gatacgagaa ttgttgcaga ggctctcaca cgggcgaaac aagtaagcaa agctgatggt
      1090       1100       1110       1120       1130       1140
gaaatcacca aggacgctaa tcaggagagg ttggagagaa tgtcccgtgc aacagaaatg
      1150       1160       1170       1180       1190       1200
gaggatcttc aagcaccaca aaacttccca ttagcaccac tctctatcaa ggaccctcgt
      1210       1220       1230       1240       1250       1260
gattactttg aatctcaaca aggaaacatc ctcagtgaac ccagaggagc aaaggcgtca
      1270       1280       1290       1300       1310       1320
aaaagaaatg tccatgaagc ttatggatta ctaaaagaat ccattttggt gattagaatg
      1330       1340       1350       1360       1370       1380
acgggattaa gtgatccgtt gattaaacct gaagtttcct ttgaggtttt cagttcgttg
      1390       1400       1410       1420       1430       1440
acccgaacta tctcaactgc caaaaatatt ctcgggaaga acccgcaaga gagctttctg
      1450       1460       1470       1480       1490       1500
gacagattac caaagtccac taaggatgaa gttatacatc actggacatc aatacaagaa
      1510       1520       1530       1540       1550       1560
ttagtgagac atttttggtc atcttaccca ataacaacga catatcttag taccaaggtt
      1570       1580       1590       1600       1610       1620
ggtaaactga aggatgcaat gtccaatact tattcactac tcgatgcaat gaaacagtcg
      1630       1640       1650       1660       1670       1680
gtgcagtctg atctccggca tcaagtttcc ttactagttc gtccaatgca acaggctctt
      1690       1700       1710       1720       1730       1740
gatgctgcgt tccaacacta cgaatcggac ttgcagagaa gaaccgctaa gattacatag

Last modification date: Oct. 2, 2011