Schizo-saccharomyces pombe Lindner (fission yeast) [SPO]

FULL NAME: Replication factor A protein 1


DESCRIPTION:
Binds to single-stranded sequences.

STRUCTURE SIMILARITY:
Belongs to the replication factor A protein 1 family.


RELATED PATHWAY(S):
DNA replication
nucleotide excision repair (NER)
mismatch repair (MMR)
homologous recombination (HR)
Fanconi anemia (FA) pathway


Amino acids sequence

        10         20         30         40         50         60
MAERLSVGAL RIINTSDASS FPPNPILQVL TVKELNSNPT SGAPKRYRVV LSDSINYAQS
        70         80         90        100        110        120
MLSTQLNHLV AENKLQKGAF VQLTQFTVNV MKERKILIVL GLNVLTELGV MDKIGNPAGL
       130        140        150        160        170        180
ETVDALRQQQ NEQNNASAPR TGISTSTNSF YGNNAAATAP APPPMMKKPA APNSLSTIIY
       190        200        210        220        230        240
PIEGLSPYQN KWTIRARVTN KSEVKHWHNQ RGEGKLFSVN LLDESGEIRA TGFNDQVDAF
       250        260        270        280        290        300
YDILQEGSVY YISRCRVNIA KKQYTNVQNE YELMFERDTE IRKAEDQTAV PVAKFSFVSL
       310        320        330        340        350        360
QEVGDVAKDA VIDVIGVLQN VGPVQQITSR ATSRGFDKRD ITIVDQTGYE MRVTLWGKTA
       370        380        390        400        410        420
IEFSVSEESI LAFKGVKVND FQGRSLSMLT SSTMSVDPDI QESHLLKGWY DGQGRGQEFA
       430        440        450        460        470        480
KHSVISSTLS TTGRSAERKN IAEVQAEHLG MSETPDYFSL KGTIVYIRKK NVSYPACPAA
       490        500        510        520        530        540
DCNKKVFDQG GSWRCEKCNK EYDAPQYRYI ITIAVGDHTG QLWLNVFDDV GKLIMHKTAD
       550        560        570        580        590        600
ELNDLQENDE NAFMNCMAEA CYMPYIFQCR AKQDNFKGEM RVRYTVMSIN QMDWKEESKR

LINFIESAQ     

Encoded by ssb1 gene


Nucleic acid sequence

        10         20         30         40         50         60
atggctgagc gattatccgt gggtgcactt cgtataatca atacatccga tgcttcgtct
        70         80         90        100        110        120
tttcctccta atccaattct ccaagtctta accgtgaagg agctaaactc aaatccaact
       130        140        150        160        170        180
tctggtgctc ctaaaagata tcgtgttgtc ctttccgatt caatcaatta tgcgcaatct
       190        200        210        220        230        240
atgttaagca cccagctgaa ccatttggtt gccgaaaata aacttcaaaa aggagcgttc
       250        260        270        280        290        300
gtacagctta cccaattcac tgtaaacgtt atgaaagaaa gaaaaatttt gattgttctt
       310        320        330        340        350        360
ggtttgaatg ttttaactga acttggcgta atggataaaa ttggtaatcc cgctggttta
       370        380        390        400        410        420
gaaacagttg acgctttacg gcagcagcaa aatgagcaaa acaatgctag cgcaccacga
       430        440        450        460        470        480
acaggtattt cgacaagcac taactcattt tatggaaaca atgctgcagc tacagcaccg
       490        500        510        520        530        540
gctccacctc ccatgatgaa gaagccagca gcgccgaata gccttagcac aataatctac
       550        560        570        580        590        600
ccaattgaag gtctctctcc atatcagaat aaatggacta ttcgtgcccg tgttactaac
       610        620        630        640        650        660
aaatctgagg ttaaacattg gcataatcaa cgaggtgaag gaaagctttt tagcgtaaat
       670        680        690        700        710        720
ttactcgatg aaagtgggga gattcgtgca acaggcttta atgaccaggt tgatgctttt
       730        740        750        760        770        780
tatgatatct tacaggaagg ttcggtttat tatatatctc gttgtcgtgt gaacattgca
       790        800        810        820        830        840
aaaaaacaat ataccaatgt tcaaaacgag tatgagctga tgtttgaacg tgatactgaa
       850        860        870        880        890        900
ataaggaaag ctgaggatca aactgccgtc cccgttgcga agtttagttt tgtttctcta
       910        920        930        940        950        960
caagaagtcg gcgatgttgc caaagatgct gttatcgatg taattggtgt actccaaaac
       970        980        990       1000       1010       1020
gttggaccag ttcaacaaat taccagtcgt gcaacttctc gtggatttga caagcgtgat
      1030       1040       1050       1060       1070       1080
atcactatcg ttgaccaaac aggatatgaa atgcgtgtta cgctttgggg aaagacagct
      1090       1100       1110       1120       1130       1140
attgaattct ctgtttctga agaaagtatt ctcgctttca aaggagttaa agttaatgac
      1150       1160       1170       1180       1190       1200
tttcaaggac gctctttgtc aatgttaact agcagcacca tgtcggtaga tccagatatc
      1210       1220       1230       1240       1250       1260
caggaatctc atttgttaaa aggttggtat gatggacagg gtagagggca ggaatttgcc
      1270       1280       1290       1300       1310       1320
aaacatagcg taatttcatc tactttatct actactggaa ggagtgctga acgtaaaaat
      1330       1340       1350       1360       1370       1380
attgctgagg ttcaagccga acatctggga atgtcagaaa cacccgatta ttttagctta
      1390       1400       1410       1420       1430       1440
aagggcacca ttgtttacat tcgaaagaaa aacgtgtcat atcctgcttg ccctgctgct
      1450       1460       1470       1480       1490       1500
gattgcaaca aaaaggtttt tgatcaaggt ggctcctggc gatgtgagaa atgtaataaa
      1510       1520       1530       1540       1550       1560
gaatatgatg ctcctcaata ccgttatatt ataactattg ctgtaggtga tcatacggga
      1570       1580       1590       1600       1610       1620
caactctggc tcaacgtctt tgacgacgtc ggtaaattaa tcatgcataa aacggcagac
      1630       1640       1650       1660       1670       1680
gaattgaatg atctacaaga aaacgacgaa aatgccttta tgaattgtat ggcagaagct
      1690       1700       1710       1720       1730       1740
tgctatatgc catatatctt tcaatgtcgt gctaagcaag acaattttaa aggtgaaatg
      1750       1760       1770       1780       1790       1800
cgagtacgct atacagtgat gtcaattaat caaatggact ggaaggaaga gtctaaaaga
      1810       1820       1830
ttgataaatt tcattgagtc tgctcaataa   

Last modification date: Oct. 2, 2011